Bifrost
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CBackwardCDBG | Wrapper for class neighborIterator to iterate over the predecessors of a reference unitig used in a UnitigMap object |
CCCDBG_Build_opt | This structure inherits from CDBG_Build_opt and introduces only a few new members which are color-related |
CCCDBG_Data_t | If data are to be associated with the unitigs of the colored and compacted de Bruijn graph, those data must be wrapped into a class that inherits from the abstract class CCDBG_Data_t |
CCDBG_Build_opt | Most members of this structure are parameters for CompactedDBG<U, G>::build(), except for: |
CCDBG_Data_t | If data are to be associated with the unitigs of the compacted de Bruijn graph, those data must be wrapped into a class that inherits from the abstract class CDBG_Data_t |
CColoredCDBG | Represent a Colored and Compacted de Bruijn graph |
CCompactedDBG | Represent a Compacted de Bruijn graph |
CDataAccessor | Interface to access the colors and the data associated with a unitig of a ColoredCDBG |
CDataStorage | |
CForwardCDBG | Wrapper for class neighborIterator to iterate over the predecessors of a reference unitig used in a UnitigMap object |
CKmer | Interface to store and manipulate k-mers |
CKmerHash | |
CneighborIterator | Iterator for the neighbors (predecessors or successors) of a reference unitig used in a UnitigMap object |
CUnitig | Represent a unitig which is a vertex of the Compacted de Bruijn graph |
▼CUnitigColors | Represent the k-mer color sets of a unitig |
CUnitigColors_const_iterator | See UnitigColors::const_iterator |
CUnitigColorsHash | |
CunitigIterator | Iterator for the unitigs of a Compacted de Bruijn graph |
CUnitigMap | Contain all the information for the mapping of a k-mer or a sequence to a unitig of a Compacted de Bruijn graph |
CUnitigMapBase | Structure containing the basic information of a unitig mapping |
CUnitigMapHash |