Bifrost
Data Structures
UnitigMap.hpp File Reference

UnitigMap type interface. More...

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Data Structures

class  Unitig< T >
 Represent a unitig which is a vertex of the Compacted de Bruijn graph. More...
 
class  CompactedDBG< Unitig_data_t, Graph_data_t >
 Represent a Compacted de Bruijn graph. More...
 
class  BackwardCDBG< Unitig_data_t, Graph_data_t, is_const >
 Wrapper for class neighborIterator to iterate over the predecessors of a reference unitig used in a UnitigMap object. More...
 
class  ForwardCDBG< Unitig_data_t, Graph_data_t, is_const >
 Wrapper for class neighborIterator to iterate over the predecessors of a reference unitig used in a UnitigMap object. More...
 
class  neighborIterator< Unitig_data_t, Graph_data_t, is_const >
 Iterator for the neighbors (predecessors or successors) of a reference unitig used in a UnitigMap object. More...
 
class  UnitigMapBase
 Structure containing the basic information of a unitig mapping. More...
 
class  UnitigMap< Unitig_data_t, Graph_data_t, is_const >
 Contain all the information for the mapping of a k-mer or a sequence to a unitig of a Compacted de Bruijn graph. More...
 
struct  UnitigMapHash< Unitig_data_t, Graph_data_t, is_const >
 

Detailed Description

UnitigMap type interface.

Code snippets using this interface are provided in snippets/test.cpp.