nimble-package	nimble-package
AD	nimDerivs
ADbreak	ADbreak
addMonitors	MCMCconf-class
addMonitors2	MCMCconf-class
addSampler	MCMCconf-class
ADNimbleList	ADNimbleList
ADproxyModelClass	ADproxyModelClass-class
ADproxyModelClass-class	ADproxyModelClass-class
AF_slice	samplers
AGHQ	laplace
AGHQuad	laplace
AGHQuad_params	nimble-internal
AGHQuad_summary	nimble-internal
all	nimble-R-functions
any	nimble-R-functions
any_na	any_na
any_nan	any_na
array	nimMatrix
as.carAdjacency	as.carAdjacency
as.carCM	as.carCM
as.list.modelValuesBaseClass-Class	nimble-internal
as.matrix.modelValuesBaseClass-Class	nimble-internal
asCol	asRow
asRow	asRow
autoBlock	autoBlock
autoBlockClass-Class	nimble-internal
barker	samplers
besselK	nimble-math
binary	samplers
BUGScontextClass-Class	nimble-internal
BUGSdeclClass	BUGSdeclClass-class
BUGSdeclClass-class	BUGSdeclClass-class
BUGSsingleContextClass-Class	nimble-internal
buildAGHQ	laplace
buildAGHQGrid	buildAGHQGrid
buildAuxiliaryFilter	buildAuxiliaryFilter
buildBootstrapFilter	buildBootstrapFilter
buildEnsembleKF	buildEnsembleKF
buildIteratedFilter2	buildIteratedFilter2
buildLaplace	laplace
buildLiuWestFilter	buildLiuWestFilter
buildMacro	buildMacro
buildMCEM	buildMCEM
buildMCMC	buildMCMC
buildWAIC	waic
c	nimble-R-functions
calcAdaptationFactor	nimble-internal
calcNodes	simNodes
calcNodesMV	simNodesMV
calculate	nodeFunctions
calculateDiff	nodeFunctions
calculateWAIC	calculateWAIC
calc_dcatConjugacyContributions	nimble-internal
calc_dmnormAltParams	nimble-internal
calc_dmnormConjugacyContributions	nimble-internal
calc_dwishAltParams	nimble-internal
CAR-Normal	CAR-Normal
CAR-Proper	CAR-Proper
carBounds	carBounds
carMaxBound	carMaxBound
carMinBound	carMinBound
CAR_calcC	nimble-internal
CAR_calcCmatrix	nimble-internal
CAR_calcEVs2	nimble-internal
CAR_calcEVs3	nimble-internal
CAR_calcM	nimble-internal
CAR_calcNumIslands	CAR_calcNumIslands
cat	nimCat
Categorical	Categorical
categorical	samplers
cc_getNodesInExpr	nimble-internal
checkConjugacy	modelBaseClass-class
checkInterrupt	checkInterrupt
ChineseRestaurantProcess	ChineseRestaurantProcess
clearCompiled	clearCompiled
cloglog	nimble-math
CmodelBaseClass	CmodelBaseClass-class
CmodelBaseClass-class	CmodelBaseClass-class
CmultiNimbleFunctionClass-Class	nimble-internal
CmultiNimbleListClass-Class	nimble-internal
CmultiNimbleObjClass-Class	nimble-internal
CnimbleFunctionBase	CnimbleFunctionBase-class
CnimbleFunctionBase-class	CnimbleFunctionBase-class
codeBlockClass	codeBlockClass-class
codeBlockClass-class	codeBlockClass-class
compileNimble	compileNimble
configureMCMC	configureMCMC
configureRJ	configureRJ
conjugacyClass-Class	nimble-internal
conjugacyRelationshipsClass-Class	nimble-internal
Constraint	Constraint
copy	nimCopy
copyExprClass-Class	nimble-internal
cppBUGSmodelClass-Class	nimble-internal
cppCodeFileClass-Class	nimble-internal
cppCPPfileClass-Class	nimble-internal
cppHfileClass-Class	nimble-internal
cppModelValuesClass-Class	nimble-internal
cppNamedObjectsClass-Class	nimble-internal
cppNimbleClassClass-Class	nimble-internal
cppNimbleFunctionClass-Class	nimble-internal
cppNimbleListClass-Class	nimble-internal
cppProjectClass-Class	nimble-internal
cppVirtualNimbleFunctionClass-Class	nimble-internal
crossLevel	samplers
CRP	samplers
CRP_concentration	samplers
cube	nimble-math
dcar_normal	CAR-Normal
dcar_proper	CAR-Proper
dcat	Categorical
dconstraint	Constraint
dCRP	ChineseRestaurantProcess
ddexp	Double-Exponential
ddirch	Dirichlet
decide	decide
decideAndJump	decideAndJump
declare	declare
dependentClass-Class	nimble-internal
deregisterDistributions	deregisterDistributions
derivs	nimDerivs
dexp_nimble	Exponential
dflat	flat
dhalfflat	flat
diag	nimble-R-functions
dim	nimDim
dinterval	Interval
dinvgamma	Inverse-Gamma
dinvwish_chol	Inverse-Wishart
Dirichlet	Dirichlet
dirichlet	Dirichlet
distClass-Class	nimble-internal
distributionInfo	distributionInfo
distributionsClass-Class	nimble-internal
dlkj	LKJ
dlkj_corr_cholesky	LKJ
dmnorm_chol	MultivariateNormal
dmulti	Multinomial
dmvt_chol	Multivariate-t
Double-Exponential	Double-Exponential
DPmeasure	samplers
dsqrtinvgamma	nimble-internal
dt_nonstandard	t
dwish_chol	Wishart
eigen	nimEigen
eigenize_nimbleNullaryClass-Class	nimble-internal
eigenNimbleList	eigenNimbleList
enableWAIC	waic
expandNodeNames	modelBaseClass-class
expit	nimble-math
Exponential	Exponential
exprClass-Class	nimble-internal
exprTypeInfoClass-Class	nimble-internal
extractControlElement	extractControlElement
findMethodsInExprClass-Class	nimble-internal
flat	flat
getBound	getBound
getBUGSexampleDir	getBUGSexampleDir
getCode	modelBaseClass-class
getConditionallyIndependentSets	getConditionallyIndependentSets
getConstants	modelBaseClass-class
getDefinition	getDefinition
getDependencies	modelBaseClass-class
getDependenciesList	modelBaseClass-class
getDimension	modelBaseClass-class
getDistribution	modelBaseClass-class
getDistributionInfo	distributionInfo
getDownstream	modelBaseClass-class
getLogProb	nodeFunctions
getLogProbNodes	simNodes
getLogProbNodesMV	simNodesMV
getMacroInits	modelBaseClass-class
getMacroParameters	getMacroParameters
getMonitors	MCMCconf-class
getMonitors2	MCMCconf-class
getNimbleOption	getNimbleOption
getNimbleProject	nimble-internal
getNodeFunctionIndexedInfo	nimble-internal
getNodeNames	modelBaseClass-class
getParam	getParam
getParamNames	distributionInfo
getParents	modelBaseClass-class
getSamplerExecutionOrder	MCMCconf-class
getSamplers	MCMCconf-class
getSamplesDPmeasure	getSamplesDPmeasure
getsize	getsize
getType	distributionInfo
getVarNames	modelBaseClass-class
getWAIC	waic
getWAICdetails	waic
halfflat	flat
icloglog	nimble-math
identityMatrix	identityMatrix
ilogit	nimble-math
indexedNodeInfoTableClass-Class	nimble-internal
initializeInfo	modelBaseClass-class
initializeModel	initializeModel
inprod	nimble-math
integer	nimNumeric
integrate	nimIntegrate
Interval	Interval
inverse	nimble-math
Inverse-Gamma	Inverse-Gamma
Inverse-Wishart	Inverse-Wishart
inverse-wishart	Inverse-Wishart
iprobit	nimble-math
is.Cmodel	nimble-internal
is.Cnf	nimble-internal
is.model	nimble-internal
is.na	nimble-R-functions
is.nan	nimble-R-functions
is.nf	is.nf
is.nfGenerator	nimble-internal
is.nl	is.nl
is.Rmodel	nimble-internal
isBinary	modelBaseClass-class
isData	modelBaseClass-class
isDeterm	modelBaseClass-class
isDiscrete	modelBaseClass-class
isEndNode	modelBaseClass-class
isMultivariate	modelBaseClass-class
isStoch	modelBaseClass-class
isTruncated	modelBaseClass-class
isUnivariate	modelBaseClass-class
isUserDefined	distributionInfo
keywordInfoClass-Class	nimble-internal
Laplace	laplace
laplace	laplace
length	nimble-R-functions
LKJ	LKJ
lkj	LKJ
lkj_corr	LKJ
lkj_corr_cholesky	LKJ
logdet	nimble-math
logfact	nimble-math
loggam	nimble-math
logical	nimNumeric
logit	nimble-math
makeBoundInfo	makeBoundInfo
MakeCustomModelClass-Class	nimble-internal
makeCustomModelValuesClass-Class	nimble-internal
makeModelDerivsInfo	makeModelDerivsInfo
makeParamInfo	makeParamInfo
mapsClass-Class	nimble-internal
matrix	nimMatrix
MCEM_mcse	nimble-internal
MCMCconf	MCMCconf-class
MCMCconf-class	MCMCconf-class
mcmc_createModelObject	nimble-internal
messageIfVerbose	nimble-internal
modelBaseClass	modelBaseClass-class
modelBaseClass-class	modelBaseClass-class
modelDefClass	modelDefClass-class
modelDefClass-class	modelDefClass-class
modelDefInfoClass-Class	nimble-internal
modelInitialization	modelInitialization
modelValues	modelValues
modelValuesBaseClass	modelValuesBaseClass-class
modelValuesBaseClass-class	modelValuesBaseClass-class
modelValuesConf	modelValuesConf
Multinomial	Multinomial
multinomial	Multinomial
Multivariate-t	Multivariate-t
multivariate-t	Multivariate-t
MultivariateNormal	MultivariateNormal
mvInfoClass-Class	nimble-internal
mvt	Multivariate-t
newModel	modelBaseClass-class
nfCompilationInfoClass-Class	nimble-internal
nfMethod	nfMethod
nfVar	nfVar
nfVar<-	nfVar
nf_preProcessMemberDataObject	nimble-internal
nimArray	nimMatrix
nimble	nimble-package
nimble-R-functions	nimble-R-functions
nimbleCode	nimbleCode
nimbleExternalCall	nimbleExternalCall
nimbleFunction	nimbleFunction
nimbleFunctionBase	nimbleFunctionBase-class
nimbleFunctionBase-class	nimbleFunctionBase-class
nimbleFunctionList	nimbleFunctionList-class
nimbleFunctionList-class	nimbleFunctionList-class
nimbleFunctionVirtual	nimbleFunctionVirtual
nimbleGraphClass-Class	nimble-internal
nimbleInternalFunctions	nimble-internal
nimbleList	nimbleList
nimbleListDefClass-Class	nimble-internal
nimbleMCMC	nimbleMCMC
nimbleModel	nimbleModel
nimbleOptions	nimbleOptions
nimbleProjectClass-Class	nimble-internal
nimbleRcall	nimbleRcall
nimbleType	nimbleType-class
nimbleType-class	nimbleType-class
nimbleUserNamespace	nimble-internal
nimC	nimble-R-functions
nimCat	nimCat
nimCopy	nimCopy
nimDerivs	nimDerivs
nimDerivsInfoClass-Class	nimble-internal
nimDim	nimDim
nimEigen	nimEigen
nimEquals	nimble-math
nimInteger	nimNumeric
nimIntegrate	nimIntegrate
nimLogical	nimNumeric
nimMatrix	nimMatrix
nimNumeric	nimNumeric
nimOptim	nimOptim
nimOptimDefaultControl	nimOptimDefaultControl
nimOptimMethod	nimOptimMethod
nimPrint	nimPrint
nimRep	nimble-R-functions
nimRound	nimble-math
nimSeq	nimble-R-functions
nimStep	nimble-math
nimStop	nimStop
nimSvd	nimSvd
nimSwitch	nimble-math
nlCompilationInfoClass-Class	nimble-internal
nodeFunctions	nodeFunctions
numeric	nimNumeric
optimControlNimbleList	optimControlNimbleList
optimDefaultControl	optimDefaultControl
optimResultNimbleList	optimResultNimbleList
parameterTransform	parameterTransform
pdexp	Double-Exponential
pexp_nimble	Exponential
phi	nimble-math
pinvgamma	Inverse-Gamma
posteriorClass-Class	nimble-internal
posterior_predictive	samplers
pow	nimble-math
pow_int	pow_int
pqDefined	distributionInfo
print	nimPrint
printErrors	printErrors
printMonitors	MCMCconf-class
printSamplers	MCMCconf-class
prior_samples	samplers
probit	nimble-math
pt_nonstandard	t
qdexp	Double-Exponential
qexp_nimble	Exponential
qinvgamma	Inverse-Gamma
qt_nonstandard	t
rankSample	rankSample
rcar_normal	CAR-Normal
rcar_proper	CAR-Proper
rcat	Categorical
RCfunctionCompileClass-Class	nimble-internal
RCfunInfoClass-Class	nimble-internal
rconstraint	Constraint
rCRP	ChineseRestaurantProcess
rdexp	Double-Exponential
rdirch	Dirichlet
readBUGSmodel	readBUGSmodel
registerDistributions	registerDistributions
removeSamplers	MCMCconf-class
rep	nimble-R-functions
resetData	modelBaseClass-class
resetMonitors	MCMCconf-class
resize	resize
rexp_nimble	Exponential
rflat	flat
rhalfflat	flat
rinterval	Interval
rinvgamma	Inverse-Gamma
rinvwish_chol	Inverse-Wishart
RJ_fixed_prior	samplers
RJ_indicator	samplers
RJ_toggled	samplers
rlkj	LKJ
rlkj_corr_cholesky	LKJ
RMakeCustomModelClass-Class	nimble-internal
Rmatrix2mvOneVar	Rmatrix2mvOneVar
rmnorm_chol	MultivariateNormal
RmodelBaseClass	RmodelBaseClass-class
RmodelBaseClass-class	RmodelBaseClass-class
rmulti	Multinomial
rmvt_chol	Multivariate-t
rsqrtinvgamma	nimble-internal
rt_nonstandard	t
run.time	run.time
runAGHQ	runLaplace
runCrossValidate	runCrossValidate
runLaplace	runLaplace
runMCMC	runMCMC
RW	samplers
rwish_chol	Wishart
RW_block	samplers
RW_block_lkj_corr_cholesky	samplers
RW_dirichlet	samplers
RW_lkj_corr_cholesky	samplers
RW_llFunction	samplers
RW_llFunction_block	samplers
RW_multinomial	samplers
RW_PF	samplers
RW_PF_block	samplers
RW_wishart	samplers
sampler	samplers
samplers	samplers
sampler_AF_slice	samplers
sampler_barker	samplers
sampler_BASE	samplers
sampler_binary	samplers
sampler_CAR_normal	samplers
sampler_CAR_proper	samplers
sampler_categorical	samplers
sampler_crossLevel	samplers
sampler_CRP	samplers
sampler_CRP_concentration	samplers
sampler_ess	samplers
sampler_noncentered	samplers
sampler_polyagamma	samplers
sampler_posterior_predictive	samplers
sampler_prior_samples	samplers
sampler_RJ_fixed_prior	samplers
sampler_RJ_indicator	samplers
sampler_RJ_toggled	samplers
sampler_RW	samplers
sampler_RW_block	samplers
sampler_RW_block_lkj_corr_cholesky	samplers
sampler_RW_dirichlet	samplers
sampler_RW_lkj_corr_cholesky	samplers
sampler_RW_llFunction	samplers
sampler_RW_llFunction_block	samplers
sampler_RW_multinomial	samplers
sampler_RW_wishart	samplers
sampler_slice	samplers
sampler_slice_CRP_base_param	samplers
samplesSummary	nimble-internal
seq	nimble-R-functions
seq_along	nimble-R-functions
setAndCalculate	setAndCalculate
setAndCalculateDiff	setAndCalculate
setAndCalculateOne	setAndCalculateOne
setData	modelBaseClass-class
setInits	modelBaseClass-class
setMonitors	MCMCconf-class
setMonitors2	MCMCconf-class
setSamplerExecutionOrder	MCMCconf-class
setSamplers	MCMCconf-class
setSize	setSize
setThin	MCMCconf-class
setThin2	MCMCconf-class
setupCodeTemplateClass-Class	nimble-internal
setupMargNodes	setupMargNodes
setupOutputs	setupOutputs
simNodes	simNodes
simNodesMV	simNodesMV
simulate	nodeFunctions
singleModelValuesAccess	nimble-internal
singleModelValuesAccessClass-Class	nimble-internal
singleVarAccessClass	singleVarAccessClass-class
singleVarAccessClass-class	singleVarAccessClass-class
slice	samplers
stickbreaking	StickBreakingFunction
StickBreakingFunction	StickBreakingFunction
stick_breaking	StickBreakingFunction
stop	nimStop
summaryAGHQ	summaryLaplace
summaryLaplace	summaryLaplace
svd	nimSvd
svdNimbleList	svdNimbleList
t	t
testBUGSmodel	testBUGSmodel
topologicallySortNodes	modelBaseClass-class
valueInCompiledNimbleFunction	valueInCompiledNimbleFunction
values	values
values<-	values
varInfoClass-Class	nimble-internal
WAIC	waic
waic	waic
waicDetailsNimbleList	waicDetailsNimbleList
waicNimbleList	waicNimbleList
which	nimble-R-functions
Wishart	Wishart
wishart	Wishart
withNimbleOptions	withNimbleOptions
[,CmodelValues-method	modelValuesBaseClass-class
[,CmodelValues-method,ANY,ANY	modelValuesBaseClass-class
[,CmodelValues-method,character,missing	modelValuesBaseClass-class
[,CmodelValues-method,character,missing,ANY-method	modelValuesBaseClass-class
[,distributionsClass-method	nimble-internal
[,modelValuesBaseClass-method	modelValuesBaseClass-class
[,numberedModelValuesAccessors-method	nimble-internal
[,numberedObjects-method	nimble-internal
[<-,CmodelValues-method	modelValuesBaseClass-class
[<-,modelValuesBaseClass-method	modelValuesBaseClass-class
[<-,numberedModelValuesAccessors-method	nimble-internal
[<-,numberedObjects-method	nimble-internal
[[,CmodelValues-method	modelValuesBaseClass-class
[[,CNumericList-method	nimble-internal
[[,conjugacyRelationshipsClass-method	nimble-internal
[[,distributionsClass-method	nimble-internal
[[,modelBaseClass-method	modelBaseClass-class
[[,nimPointerList-method	nimble-internal
[[,RNumericList-method	nimble-internal
[[<-,CmodelValues-method	modelValuesBaseClass-class
[[<-,CNumericList-method	nimble-internal
[[<-,modelBaseClass-method	modelBaseClass-class
[[<-,nimbleFunctionList-method	nimble-internal
[[<-,nimPointerList-method	nimble-internal
[[<-,RNumericList-method	nimble-internal
